PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1216_p4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 323aa    MW: 34908.6 Da    PI: 7.1094
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1216_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.12.4e-16169215455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  E+rRR+riN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  RrC1216_p4 169 VHNLSEKRRRSRINEKMKALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 215
                 6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-20163225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.063165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-19166225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.35E-18168219No hitNo description
PfamPF000108.5E-14169215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-18171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MADKKLISSA SSSSTSIYDP RGNNNHQPPS SSDEISQFLR HIFDRSSPLP SHYSPAYTAA  60
TGGDPHADNN TTRCFVSPPS SKRAAAAEFS DVPLGSASAV PCYGFSGGNN NVAQGSSSGT  120
RVSSSSLGAS GNETDEYDCE SEEGVEAVVD DEHPSKSRSS SKRCRAAEVH NLSEKRRRSR  180
INEKMKALQS LIPNSNKTDK ASMLDEAIEY LKQLQLQVQM LTMRNGINLH PLSLPGTSLH  240
PLQLSQIRPP ETTTDPLLNQ FASTSNAPDM INMPSAYTLE PSIRSHFGRF LPFTPPVEMN  300
REGGLTHQRL NIGGHPNANL TGK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9210901e-146KF921090.1 Brassica oleracea var. capitata bHLH transcription factor SPT mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013583356.11e-171PREDICTED: transcription factor SPATULA isoform X1
SwissprotQ9FUA41e-130SPT_ARATH; Transcription factor SPATULA
TrEMBLA0A0D3A1C11e-171A0A0D3A1C1_BRAOL; Uncharacterized protein
STRINGBra011740.1-P1e-155(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41992754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-128bHLH family protein